Mining PubMed for relationships

Note: As of May 2024, this site no longer work. This is due to the incompatability between the webserver and database driver after security updates. Please visit GeneCup for a similar service

Chilibot searches PubMed literature database (abstracts) about specific relationships between proteins, genes, or keywords. The results are returned as a graph (see examples). We support several different search methods.

Search for relationship between two genes, proteins or keywords

Examples:
BDNF & TRKB
BDNF & polymorphism
BDNF & modulate
&

Search for relationships between many genes, proteins, or keywords

Example: 
Apoptosis
TrkB
BDNF
Nur77

Search for relationships between two lists of genes, proteins, or keywords

Example: 
List 1 
Apoptosis
Cancer
List 2 
BDNF
Creb
TrkB

Advanced options

  • Automated hypothesis generation [graph]
  • Restricting context using keywords
  • Providing your own synonyms
  • Modifying synonyms provided by Chilibot
  • Color coding nodes with gene expression values
  • Special search: modulation